- #1
mycotheology
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For anyone that doesn't know, 23andme is a company that sequences your genome for you (you send them a saliva sample). It gives you a raw data file ful of SNPs. Heres an example of some SNPs from a raw data file:
rs3128126 1 962210 GG
rs2710875 1 977780 TT
rs2465136 1 990417 CT
rs2488991 1 994391 --
rs7526076 1 998395 AA
rs3934834 1 1005806 CC
rs3766192 1 1017197 CC
rs3766191 1 1017587 CC
rs9442372 1 1018704 AA
rs10907177 1 1021346 AA
rs3737728 1 1021415 AA
rs10907178 1 1021583 AA
rs11260588 1 1021658 GG
rs9442398 1 1021695 --
I have a few questions about this. Firstly, what does -- mean, does that mean the genotype of that SNP is unknown? Secondly, some SNPs only give one letter, what does that mean? Does that mean they could only determine the genotype of one of the alleles?
rs3128126 1 962210 GG
rs2710875 1 977780 TT
rs2465136 1 990417 CT
rs2488991 1 994391 --
rs7526076 1 998395 AA
rs3934834 1 1005806 CC
rs3766192 1 1017197 CC
rs3766191 1 1017587 CC
rs9442372 1 1018704 AA
rs10907177 1 1021346 AA
rs3737728 1 1021415 AA
rs10907178 1 1021583 AA
rs11260588 1 1021658 GG
rs9442398 1 1021695 --
I have a few questions about this. Firstly, what does -- mean, does that mean the genotype of that SNP is unknown? Secondly, some SNPs only give one letter, what does that mean? Does that mean they could only determine the genotype of one of the alleles?