What Variables Do I Need to Calculate the Sedimentation Coefficient and Mass?

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In summary, the conversation is about analytical centrifugation and the given parameters for calculating the sedimentation coefficient and mass. The equations for velocity and sedimentation coefficient are provided, but the radius is needed to compute the sedimentation coefficient. The radius can be obtained from a given chart and then used to calculate the velocity and sedimentation coefficient. Finally, the mass can be calculated using the sedimentation coefficient and other given parameters.
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Starcrafty
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Hey Guys,
so I am in a jam here... I am working on a question regarding analytical centrifugation. Here is what is given. I am given, the density of the solution, Partian specific volume, frictional coefficeent,and the centrifugation speed in rpm. I am also given a chart of 5 time points and the r of the protein at these timepoints.

From this I am supposed to figure out the sedimentation coefficient, and the mass.
The equations i have are
v=(w2rM(1-Vp))/Nf

where v = velocity, w= angular velocity, r = radius from center, M=molar mass, V = partial specific volume, and p = density of the solution

and

s = v/(w2r) = (M(1-Vp))/(Nf)

where s=sedimentation coefficient, N=avagadros number and f=frictional coefficient.

So i can calculate w from the rpm, however inorder to actually calculate the force and get s I think i need the r can anyone confirm this? because inorder to move forward and calculate M i need s. Maybe I am just missing something here x.x.

Also by plotting the time vs r from the chart in excel i have determined the v
 
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  • #2
by taking the difference in r over the difference in time, is this a valid assumption?Thanks for any help you can give me. Yes, you need the radius to be able to compute the sedimentation coefficient. You can also calculate the velocity from the equation v=(w2rM(1-Vp))/Nf. From the equation, you have all the variables except for the radius which you can get from the given chart. Once you get the velocity, you can then calculate the sedimentation coefficient using the equation s = v/(w2r). After that, you can calculate the mass using the equation M=Nfs/((1-Vp)w2r).
 

FAQ: What Variables Do I Need to Calculate the Sedimentation Coefficient and Mass?

What is sedimentation coefficient?

Sedimentation coefficient is a measure of the rate at which a particle or molecule moves through a solution under the influence of gravity or centrifugal force. It is expressed in units of svedberg (S) and is used to characterize the size and shape of particles in a solution.

How is sedimentation coefficient determined?

Sedimentation coefficient is determined through a process called analytical ultracentrifugation. In this technique, a solution containing the particles of interest is placed in a centrifuge, which spins the solution at high speeds. The rate at which the particles sediment (settle) towards the bottom of the centrifuge tube is measured and used to calculate the sedimentation coefficient.

What factors can affect sedimentation coefficient?

The sedimentation coefficient of a particle can be affected by several factors, including the size and shape of the particle, the density and viscosity of the solution, and the temperature and centrifugal force used in the measurement. Additionally, interactions between particles or with the surrounding solution can also impact the sedimentation coefficient.

How is sedimentation coefficient used in research?

Sedimentation coefficient is a valuable tool in many areas of scientific research, including biochemistry, biophysics, and molecular biology. It can be used to study the structure and behavior of proteins, nucleic acids, and other biomolecules, as well as to characterize particles in industrial and environmental samples.

What is the significance of sedimentation coefficient in biology?

In biology, sedimentation coefficient is an important parameter for understanding the structure and function of macromolecules. It can provide information about the size, shape, and interactions of biomolecules, which are essential for understanding their roles in biological processes. Changes in sedimentation coefficient can also indicate alterations in the structure or composition of a biomolecule, which may be associated with disease or other physiological conditions.

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