FAQ: Does everything expand equally because of cosmological expansion?
No. If everything expanded by the same percentage per year, then all our rulers and other distance-measuring devices would expand, and we wouldn't be able to detect any expansion at all. Actually, general relativity predicts that cosmological expansion has very little effect on objects that are small and strongly bound. Expansion is too small an effect to detect at any scale below that of distant galaxies.
Cooperstock et al. have estimated the effect for systems of interest such as the solar system. For example, the predicted general-relativistic effect on the radius of the Earth's orbit since the time of the dinosaurs is calculated to be about as big as the diameter of an atomic nucleus; if the Earth's orbit had expanded according to the cosmological scaling function a(t), the increase would have been millions of kilometers.
To see why the solar-system effect is so small, let's consider how it can depend on a(t). The Milne universe is just flat spacetime described in silly coordinates, and it has \dot{a}\ne 0, i.e., a nonvanishing value of H_o. This shows that we should not expect any expansion of the solar system due to \dot{a}\ne 0. The lowest-order effect requires \ddot{a}\ne 0. Since a rescaling like a(t)\rightarrow 2a(t) has no physical meaning, we can guess that the effect is proportional to \ddot{a}/a. Based on units, we expect that multiplying this by the size of the solar system might give an estimate of the anomalous acceleration with which the solar system expands, and this is indeed the result of Cooperstock's rigorous calculation. The fractional rate of anomalous acceleration \ddot{r}/r is about H_o^2\sim 10^{-35}\ s^{-2}. The result for \ddot{r}/r is valid for r\ll 1/H_o and is independent of r, so it can be applied to similar systems with circular orbits at other scales, such as the earth-moon system or a pair of galaxies in circular orbits about their common center of mass. It can't be applied to systems bound by non-gravitational forces, such as atoms and nuclei.
A nice way of discussing atoms, nuclei, photons, and solar systems all on the same footing is to note that in geometrized units, the units of mass and length are the same. Therefore the existence of any fundamental massive particle sets a universal length scale, one that will be known to any intelligent species anywhere in the universe. Since photons are massless, they can't be used to set a universal scale in this way; a photon has a certain mass-energy, but that mass-energy can take on any value. Similarly, a solar system sets a length scale, but not a universal one; the radius of a planet's orbit can take on any value. A universe without massive fundamental particles would be a universe without distance measurement. It would obey the laws of conformal geometry, in which angles and light-cones were the only measures. This is the reason that atoms and nuclei, which are made of massive fundamental particles, do not expand.
Cooperstock, Faraoni, and Vollick, "The influence of the cosmological expansion on local systems,"
http://arxiv.org/abs/astro-ph/9803097v1