In a scenario where an object is moving at a constant velocity in free space and two equal but opposite forces are applied, work is done by the force in the direction of motion, despite the net work being zero. The discussion highlights that while the opposing forces cancel each other out, the force applied in the direction of motion still contributes to work because the object is already in motion. It is clarified that work is defined as force applied over a distance, and in this case, the movement allows for work to occur. The confusion arises from equating the application of force with the concept of work, emphasizing that work is contingent on displacement. Ultimately, understanding how forces interact with a moving object is crucial in grasping the concept of work done in physics.